{
  "_id": "6a1efa40b401979e7341855e",
  "Package": "apsimx",
  "Title": "Inspect, Read, Edit and Run 'APSIM' \"Next Generation\" and\n'APSIM' Classic",
  "Version": "2.8.257",
  "Authors@R": "person(\"Fernando\", \"Miguez\", email = \"femiguez@iastate.edu\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4627-8329\"))",
  "Description": "The functions in this package inspect, read, edit and run\nfiles for 'APSIM' \"Next Generation\" ('JSON') and 'APSIM'\n\"Classic\" ('XML'). The files with an 'apsim' extension\ncorrespond to 'APSIM' Classic (7.x) - Windows only - and the\nones with an 'apsimx' extension correspond to 'APSIM' \"Next\nGeneration\". For more information about 'APSIM' see\n(<https://www.apsim.info/>) and for 'APSIM' next generation\n(<https://apsimnextgeneration.netlify.app/>).",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "VignetteBuilder": "knitr",
  "BugReports": "https://github.com/femiguez/apsimx/issues",
  "LazyData": "true",
  "RoxygenNote": "7.3.2",
  "Config/pak/sysreqs": "libxml2-dev",
  "Repository": "https://femiguez.r-universe.dev",
  "Date/Publication": "2026-05-18 15:51:56 UTC",
  "RemoteUrl": "https://github.com/femiguez/apsimx",
  "RemoteRef": "HEAD",
  "RemoteSha": "80959826d6d564dd87abb2c5f843019015c777f5",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-18 16:07:51 UTC",
    "User": "root"
  },
  "Author": "Fernando Miguez [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-4627-8329>)",
  "Maintainer": "Fernando Miguez <femiguez@iastate.edu>",
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  "_user": "femiguez",
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  "_created": "2026-05-18T16:07:51.000Z",
  "_published": "2026-06-02T15:44:00.432Z",
  "_distro": "noble",
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  "_upstream": "https://github.com/femiguez/apsimx",
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    "committer": "Fernando Miguez <fer.eze.miguez@gmail.com>",
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      "package": "utils",
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    },
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      "package": "soilDB",
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    },
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      "package": "sp",
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      "package": "spData",
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      "package": "ucminf",
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  "_owner": "femiguez",
  "_selfowned": true,
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  "_updates": [
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  "_topics": [
    "apsim",
    "apsimx"
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  "_contributors": [
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  "_devurl": "https://github.com/femiguez/apsimx",
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  "_assets": [
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    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
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    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
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  "_homeurl": "https://github.com/femiguez/apsimx",
  "_realowner": "femiguez",
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  "_releases": [
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      "date": "2020-07-01"
    },
    {
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      "date": "2020-07-09"
    },
    {
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      "date": "2020-10-17"
    },
    {
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      "date": "2021-01-14"
    },
    {
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      "date": "2021-03-15"
    },
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      "date": "2021-07-01"
    },
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    {
      "version": "2.0",
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    },
    {
      "version": "2.2",
      "date": "2021-12-04"
    },
    {
      "version": "2.3.1",
      "date": "2022-01-04"
    },
    {
      "version": "2.6.1",
      "date": "2024-01-27"
    },
    {
      "version": "2.6.2",
      "date": "2024-01-29"
    },
    {
      "version": "2.7.7",
      "date": "2024-05-06"
    },
    {
      "version": "2.8.0",
      "date": "2024-08-19"
    },
    {
      "version": "2.8.235",
      "date": "2025-03-10"
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  ],
  "_exports": [
    "add_column_apsim_met",
    "amp_apsim_met",
    "apsim",
    "apsim_example",
    "apsim_options",
    "apsim_version",
    "apsim.options",
    "apsimx",
    "apsimx_example",
    "apsimx_filetype",
    "apsimx_options",
    "apsimx_soil_profile",
    "apsimx.options",
    "as_apsim_met",
    "auto_detect_apsim_examples",
    "auto_detect_apsimx_examples",
    "available_water_content",
    "carbon_stocks",
    "check_apsim_met",
    "check_apsimx",
    "check_apsimx_soil_profile",
    "compare_apsim",
    "compare_apsim_met",
    "compare_apsim_soil_profile",
    "date2doy",
    "doy2date",
    "edit_apsim",
    "edit_apsim_replace_soil_profile",
    "edit_apsim_xml",
    "edit_apsimx",
    "edit_apsimx_batch",
    "edit_apsimx_replace_soil_profile",
    "edit_apsimx_replacement",
    "extract_data_apsimx",
    "extract_values_apsimx",
    "get_apsimx_json",
    "get_chirps_apsim_met",
    "get_daymet_apsim_met",
    "get_daymet2_apsim_met",
    "get_gsod_apsim_met",
    "get_iem_apsim_met",
    "get_iemre_apsim_met",
    "get_isric_soil_profile",
    "get_power_apsim_met",
    "get_slga_soil",
    "get_slga_soil_profile",
    "get_ssurgo_soil_profile",
    "get_ssurgo_tables",
    "get_worldmodeler_apsim_met",
    "get_worldmodeler_soil_profile",
    "grep_json_list",
    "impute_apsim_met",
    "initialwater_parms",
    "insert_replacement_node",
    "inspect_apsim",
    "inspect_apsim_xml",
    "inspect_apsimx",
    "inspect_apsimx_json",
    "inspect_apsimx_replacement",
    "mcmc.apsim.env",
    "mcmc.apsimx.env",
    "napad_apsim_met",
    "optim_apsim",
    "optim_apsimx",
    "read_apsim",
    "read_apsim_all",
    "read_apsim_met",
    "read_apsim_soils",
    "read_apsimx",
    "read_apsimx_all",
    "remove_column_apsim_met",
    "sens_apsim",
    "sens_apsimx",
    "soilorganicmatter_parms",
    "soilwat_parms",
    "solutes_parms",
    "ssurgo2sp",
    "swim_parms",
    "tav_apsim_met",
    "tt_apsim_met",
    "unit_conv",
    "view_apsim",
    "view_apsim_xml",
    "view_apsimx",
    "write_apsim_met",
    "xargs_apsimx"
  ],
  "_datasets": [
    {
      "name": "obsWheat",
      "title": "Observed wheat phenology, LAI and biomass",
      "object": "obsWheat",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Date",
        "Wheat.Phenology.Stage",
        "Wheat.Leaf.LAI",
        "Wheat.AboveGround.Wt"
      ],
      "rows": 10,
      "table": true,
      "tojson": true
    },
    {
      "name": "wop",
      "title": "Wheat example optimization results",
      "object": "wheat-opt-ex",
      "class": [
        "optim_apsim"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "wop.h",
      "title": "Wheat example optimization results plus Hessian",
      "object": "wheat-opt-ex",
      "class": [
        "optim_apsim"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "add_column_apsim_met",
      "title": "Add a column to an object of class 'met'",
      "topics": [
        "$<-.met",
        "add_column_apsim_met",
        "remove_column_apsim_met",
        "[<-.met",
        "[[<-.met"
      ]
    },
    {
      "page": "amp_apsim_met",
      "title": "Calculates attribute amp for an object of class 'met'",
      "topics": [
        "amp_apsim_met"
      ]
    },
    {
      "page": "apsim",
      "title": "Run an APSIM (7.x) 'Classic' simulation",
      "topics": [
        "apsim"
      ]
    },
    {
      "page": "apsim_example",
      "title": "Access Example APSIM Simulations",
      "topics": [
        "apsim_example"
      ]
    },
    {
      "page": "apsim_options",
      "title": "Setting some options specific to APSIM (7.x) 'Classic'",
      "topics": [
        "apsim_options"
      ]
    },
    {
      "page": "apsim_version",
      "title": "Display available APSIM 'Classic' and APSIM-X versions",
      "topics": [
        "apsim_version"
      ]
    },
    {
      "page": "apsim.options",
      "title": "Environment which stores APSIM options",
      "topics": [
        "apsim.options"
      ]
    },
    {
      "page": "apsimx",
      "title": "Run an APSIM-X simulation",
      "topics": [
        "apsimx"
      ]
    },
    {
      "page": "apsimx_example",
      "title": "Access Example APSIM-X Simulations",
      "topics": [
        "apsimx_example"
      ]
    },
    {
      "page": "apsimx_filetype",
      "title": "Test file format for .apsimx files",
      "topics": [
        "apsimx_filetype"
      ]
    },
    {
      "page": "apsimx_options",
      "title": "Setting some options for the package",
      "topics": [
        "apsimx_options"
      ]
    },
    {
      "page": "apsimx_soil_profile",
      "title": "Create APSIM-X Soil Profiles",
      "topics": [
        "apsimx_soil_profile",
        "check_apsimx_soil_profile",
        "plot.soil_profile"
      ]
    },
    {
      "page": "apsimx.options",
      "title": "Environment which stores APSIM-X options",
      "topics": [
        "apsimx.options"
      ]
    },
    {
      "page": "as_apsim_met",
      "title": "Conversion from data frame to met object",
      "topics": [
        "as_apsim_met"
      ]
    },
    {
      "page": "auto_detect_apsim_examples",
      "title": "Auto detect where apsim examples are located",
      "topics": [
        "auto_detect_apsim_examples"
      ]
    },
    {
      "page": "auto_detect_apsimx_examples",
      "title": "Auto detect where apsimx examples are located",
      "topics": [
        "auto_detect_apsimx_examples"
      ]
    },
    {
      "page": "available_water_content",
      "title": "Calculate available water content",
      "topics": [
        "available_water_content"
      ]
    },
    {
      "page": "carbon_stocks",
      "title": "Calculate soil carbon stocks",
      "topics": [
        "carbon_stocks"
      ]
    },
    {
      "page": "check_apsim_met",
      "title": "Check a met file for possible errors",
      "topics": [
        "check_apsim_met"
      ]
    },
    {
      "page": "check_apsimx",
      "title": "Partial checking of an apsimx file for possible issues.",
      "topics": [
        "check_apsimx"
      ]
    },
    {
      "page": "compare_apsim",
      "title": "Compare two or more apsim output objects",
      "topics": [
        "compare_apsim",
        "plot.out_mrg",
        "print.out_mrg"
      ]
    },
    {
      "page": "compare_apsim_met",
      "title": "Compare two or more 'met' files",
      "topics": [
        "compare_apsim_met",
        "plot.met_mrg",
        "print.met_mrg"
      ]
    },
    {
      "page": "compare_apsim_soil_profile",
      "title": "Compare two or more soil profiles",
      "topics": [
        "compare_apsim_soil_profile",
        "plot.soil_profile_mrg",
        "print.soil_profile_mrg"
      ]
    },
    {
      "page": "doy2date",
      "title": "Converts from doy to date",
      "topics": [
        "date2doy",
        "doy2date"
      ]
    },
    {
      "page": "edit_apsim",
      "title": "Edit an APSIM (Classic) Simulation",
      "topics": [
        "edit_apsim"
      ]
    },
    {
      "page": "edit_apsim_replace_soil_profile",
      "title": "Edit APSIM 'Classic' file with a replaced soil profile",
      "topics": [
        "edit_apsim_replace_soil_profile"
      ]
    },
    {
      "page": "edit_apsim_xml",
      "title": "Edit an APSIM (Classic) Simulation auxiliary xml file",
      "topics": [
        "edit_apsim_xml"
      ]
    },
    {
      "page": "edit_apsimx",
      "title": "Edit an APSIM-X (JSON) Simulation",
      "topics": [
        "edit_apsimx"
      ]
    },
    {
      "page": "edit_apsimx_batch",
      "title": "Edit an APSIM-X (JSON) Simulation in Batch mode",
      "topics": [
        "edit_apsimx_batch"
      ]
    },
    {
      "page": "edit_apsimx_replace_soil_profile",
      "title": "Edit APSIM-X file with a replaced soil profile",
      "topics": [
        "edit_apsimx_replace_soil_profile"
      ]
    },
    {
      "page": "edit_apsimx_replacement",
      "title": "Edit a replacement component in an .apsimx (JSON) file",
      "topics": [
        "edit_apsimx_replacement"
      ]
    },
    {
      "page": "extract_data_apsimx",
      "title": "Extract data from an .apsimx (JSON) file",
      "topics": [
        "extract_data_apsimx"
      ]
    },
    {
      "page": "extract_values_apsimx",
      "title": "Extract values from a parameter path",
      "topics": [
        "extract_values_apsimx"
      ]
    },
    {
      "page": "get_apsimx_json",
      "title": "fetches the json file for a specific model from APSIMX github",
      "topics": [
        "get_apsimx_json"
      ]
    },
    {
      "page": "get_chirps_apsim_met",
      "title": "Get CHIRPS data for an APSIM met file",
      "topics": [
        "get_chirps_apsim_met"
      ]
    },
    {
      "page": "get_daymet_apsim_met",
      "title": "Get DAYMET data for an APSIM met file",
      "topics": [
        "get_daymet_apsim_met"
      ]
    },
    {
      "page": "get_daymet2_apsim_met",
      "title": "Get DAYMET data for an APSIM met file",
      "topics": [
        "get_daymet2_apsim_met"
      ]
    },
    {
      "page": "get_gsod_apsim_met",
      "title": "Get GSOD data for an APSIM met file",
      "topics": [
        "get_gsod_apsim_met"
      ]
    },
    {
      "page": "get_iem_apsim_met",
      "title": "Get weather data from Iowa Environmental Ag Weather Stations",
      "topics": [
        "get_iem_apsim_met"
      ]
    },
    {
      "page": "get_iemre_apsim_met",
      "title": "Get weather data from Iowa Environmental Mesonet Reanalysis",
      "topics": [
        "get_iemre_apsim_met"
      ]
    },
    {
      "page": "get_isric_soil_profile",
      "title": "Generate a synthetic APSIM soil profile from the ISRIC soil database",
      "topics": [
        "get_isric_soil_profile"
      ]
    },
    {
      "page": "get_power_apsim_met",
      "title": "Get NASA-POWER data for an APSIM met file",
      "topics": [
        "get_power_apsim_met"
      ]
    },
    {
      "page": "get_slga_soil",
      "title": "Retrieve soil profile data from SLGA (Soils for Australia)",
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      "page": "get_ssurgo_tables",
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      "page": "get_worldmodeler_apsim_met",
      "title": "Obtain a weather APSIM met from the World Modeler database",
      "topics": [
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      "page": "get_worldmodeler_soil_profile",
      "title": "Obtain a synthetic APSIM soil profile from the World Modeler database",
      "topics": [
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      ]
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    {
      "page": "grep_json_list",
      "title": "grep but for json list",
      "topics": [
        "grep_json_list"
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    },
    {
      "page": "impute_apsim_met",
      "title": "Perform imputation for missing data in a met file",
      "topics": [
        "impute_apsim_met"
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    },
    {
      "page": "initialwater_parms",
      "title": "Helper function to supply additional Initial Soil Water parameters",
      "topics": [
        "initialwater_parms"
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    },
    {
      "page": "insert_replacement_node",
      "title": "Inserts a replacement node in a simple apsimx simulation file",
      "topics": [
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      "page": "inspect_apsim",
      "title": "Inspect an .apsim (XML) file",
      "topics": [
        "inspect_apsim"
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    {
      "page": "inspect_apsim_xml",
      "title": "Inspect an APSIM Classic auxiliary (XML) file",
      "topics": [
        "inspect_apsim_xml"
      ]
    },
    {
      "page": "inspect_apsimx",
      "title": "Inspect an .apsimx (JSON) file",
      "topics": [
        "inspect_apsimx"
      ]
    },
    {
      "page": "inspect_apsimx_json",
      "title": "Inspect an .apsimx or .json (JSON) file",
      "topics": [
        "inspect_apsimx_json"
      ]
    },
    {
      "page": "inspect_apsimx_replacement",
      "title": "Inspect a replacement component in an .apsimx (JSON) file",
      "topics": [
        "inspect_apsimx_replacement"
      ]
    },
    {
      "page": "mcmc.apsim.env",
      "title": "Environment to store data for apsim MCMC",
      "topics": [
        "mcmc.apsim.env"
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      "page": "mcmc.apsimx.env",
      "title": "Environment to store data for apsimx MCMC",
      "topics": [
        "mcmc.apsimx.env"
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    {
      "page": "napad_apsim_met",
      "title": "Pad a met file with NAs when there are date discontinuities",
      "topics": [
        "napad_apsim_met"
      ]
    },
    {
      "page": "obsWheat",
      "title": "Observed wheat phenology, LAI and biomass",
      "topics": [
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      ]
    },
    {
      "page": "optim_apsim",
      "title": "Optimize parameters in an APSIM simulation",
      "topics": [
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        "confint.optim_apsim",
        "optim_apsim",
        "print.optim_apsim",
        "vcov.optim_apsim"
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    {
      "page": "optim_apsimx",
      "title": "Optimize parameters in an APSIM Next Generation simulation",
      "topics": [
        "optim_apsimx"
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    },
    {
      "page": "plot.met",
      "title": "Plot method for object of class 'met'",
      "topics": [
        "plot.met"
      ]
    },
    {
      "page": "print.met",
      "title": "Printer-friendly version of a metfile",
      "topics": [
        "print.met"
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    {
      "page": "read_apsim",
      "title": "Read APSIM generated .out files",
      "topics": [
        "read_apsim"
      ]
    },
    {
      "page": "read_apsim_all",
      "title": "Read all APSIM generated .out files in a directory",
      "topics": [
        "read_apsim_all"
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    },
    {
      "page": "read_apsim_met",
      "title": "Read in an APSIM met file",
      "topics": [
        "read_apsim_met"
      ]
    },
    {
      "page": "read_apsim_soils",
      "title": "Read in a soils (XML) file into a list of 'soil_profile' objects",
      "topics": [
        "read_apsim_soils"
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    },
    {
      "page": "read_apsimx",
      "title": "Read APSIM-X generated .db files",
      "topics": [
        "read_apsimx"
      ]
    },
    {
      "page": "read_apsimx_all",
      "title": "Read all APSIM-X generated .db files in a directory",
      "topics": [
        "read_apsimx_all"
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    },
    {
      "page": "sens_apsim",
      "title": "Sensitivity Analysis for APSIM Next Generation simulation",
      "topics": [
        "sens_apsim"
      ]
    },
    {
      "page": "sens_apsimx",
      "title": "Sensitivity Analysis for APSIM Next Generation simulation",
      "topics": [
        "print.sens_apsim",
        "sens_apsimx",
        "summary.sens_apsim"
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    },
    {
      "page": "soilorganicmatter_parms",
      "title": "Helper function to supply additional Soil Organic Matter parameters",
      "topics": [
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    {
      "page": "soilwat_parms",
      "title": "Helper function to supply SoilWat parameters",
      "topics": [
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      ]
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    {
      "page": "solutes_parms",
      "title": "Helper function to supply additional Solute parameters",
      "topics": [
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    {
      "page": "ssurgo2sp",
      "title": "Take in SSURGO csv files and create a soil profile",
      "topics": [
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    {
      "page": "summary.met",
      "title": "Summary for an APSIM met file",
      "topics": [
        "summary.met"
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    },
    {
      "page": "swim_parms",
      "title": "Helper function to supply SWIM parameters",
      "topics": [
        "swim_parms"
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    {
      "page": "tav_apsim_met",
      "title": "Calculates attribute amp for an object of class 'met'",
      "topics": [
        "tav_apsim_met"
      ]
    },
    {
      "page": "tt_apsim_met",
      "title": "Calculates Thermal Time taking a 'met' object",
      "topics": [
        "tt_apsim_met"
      ]
    },
    {
      "page": "unit_conv",
      "title": "performs common unit conversions",
      "topics": [
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    {
      "page": "view_apsim",
      "title": "Viewing an APSIM Classic file interactively",
      "topics": [
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    },
    {
      "page": "view_apsim_xml",
      "title": "View an APSIM Classic auxiliary (XML) file",
      "topics": [
        "view_apsim_xml"
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    {
      "page": "view_apsimx",
      "title": "Viewing an APSIM-X file interactively",
      "topics": [
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    },
    {
      "page": "wop",
      "title": "Wheat example optimization results",
      "topics": [
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    },
    {
      "page": "wop.h",
      "title": "Wheat example optimization results plus Hessian",
      "topics": [
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      "page": "write_apsim_met",
      "title": "Write an APSIM met file",
      "topics": [
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    },
    {
      "page": "xargs_apsimx",
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      "topics": [
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      "title": "apsimx: An R package for APSIM Next Generation (and Classic)",
      "author": "Fernando Miguez",
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        "Background information",
        "Installing APSIM (Next Generation)",
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        "Using 'apsimx'",
        "Running a built-in example with 'apsimx_example'",
        "Inspecting a file with 'inspect_apsimx': Why?",
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        "File Type (or File Format) Details",
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        "Unix and Windows paths",
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      "headings": [
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        "sens_apsimx",
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        "Creating grids",
        "First option: parameterSets",
        "Second option: Morris"
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      "modified": "2024-05-06 14:14:14",
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